Rapid salinity changes affect the survival and physiology of a penaeid prawn: Implications of flood events on recruitment to the fishery

Estuaries act as nurseries for many penaeid prawns, but these habitats are highly susceptible to salinity decline through flooding. The rate of salinity decline and duration of exposure to non‐optimal salinity may affect survival and subsequent recruitment of prawns to the fishery. This study aimed to determine the effect of salinity fluctuations observed in local estuaries during flood events using a novel dilution approach. Mortality of juvenile Melicertus plebejus (Hess) was assessed after 24 hr exposure to 24 rates of salinity decline ranging from 0.01% to 20% per hr. After the salinity decline, prawns were held at the final salinities for five days before again assessing mortality as well as aerobic metabolic rate and prawn water content. Salinity decline from 36 to ~0.8 led to 50% mortality, but continued exposure to low salinity for five days increased mortality at this salinity to 99% and shifted the 50% mortality point to salinity ~5. Aerobic metabolic rate and water content data suggested the cause of mortality due to exposure to salinities < 5 was osmoregulatory failure. Rapid salinity declines over 24 hr and sustained low salinity due to flooding could compromise the survival of juvenile prawns, potentially reducing recruitment to the fishery.     

Mycobacteriosis caused by Mycobacterium marinum in reared mullets: first evidence from Sardinia (Italy)

Mycobacterium marinum is a slow‐growing non‐tuberculous mycobacterium, and it is considered the most common aetiologic agent of mycobacteriosis in wild and cultured fish. The diagnosis is principally made by histology when positive Ziehl–Neelsen stain granulomas are detected. The aim of this study was to investigate the occurrence of mycobacteriosis in extensively cultured Mugilidae of two lagoons (Cabras and San Teodoro) from Sardinia by the use of histology, microbiology, PCR and DNA sequencing. Nine of 106 mullets examined were affected by mycobacteriosis, and the spleen was the most affected organ. The histology detected higher rate (100%) of infection in spleen than the culture and PCR (75% and 62.5%, respectively). The sequencing of hsp65 gene identified M. marinum as the primary cause of mycobacteriosis in the mullets examined. Mullets affected by mycobacteriosis were mainly fished in the San Teodoro lagoon characterized by critical environmental conditions. Histology remains the most common method in detecting fish affected by mycobacteriosis, and PCR‐based methods are essential for species identification. Our finding are worthy of attention because mycobacteriosis caused by M. marinum in reared mullets was evidenced for the first time in Sardinia, suggesting that this disease may be underestimated also in other cultured fish species.     

Evaluation of mechanical properties of jute/glass/carbon fibers reinforced hybrid composites

A study on the tensile and flexural properties of jute-glass-carbon fibers reinforced epoxy hybrid composites in inter-ply configuration is presented in this paper. Test specimens were manufactured by hand lay-up process and their tensile and flexural properties were obtained. The effects of the hybridization, different fibers content and plies stacking sequence on the mechanical properties of the tested hybrid composites were investigated. Two-parameter Weibull distribution function was used to statistically analyze the experimental results. The failure probability graphs for the tested composites were drawn. These graphs are important tools for helping the designers to understand and choose the suitable material for the required design and development. Results showed that the hybridization process can potentially improve the tensile and flexural properties of jute reinforced composite. The flexural strength decreases when partial laminas from a carbon/epoxy laminate are replaced by glass/epoxy or jute/epoxy laminas. Also, it is realized that incorporating high strength fibers to the outer layers of the composite leads to higher flexural resistance, whilst the order of the layers doesn’t affect the tensile properties.     

Effects of starvation,subsequent feeding and photoperiod on flesh quality in farmed cod (Gadus morhua)

The study was designed to investigate the effect of four cycles of 5 weeks starvation followed by 10‐week refeeding compared with daily feeding under either natural photoperiod or continuous light (LL) regime on body composition and flesh quality in Atlantic cod in sea cages, northern Norway. The fish were sampled for body composition and flesh quality parameters at the start of the trial, twice at the end of a 10‐week feeding period and twice at the end of a 5‐week starvation period. There was effect of both feeding and light regime on growth, the two starving groups losing weight during starvation and regaining weight during refeeding, and the group under LL being heavier. But, the mean overall growth did not vary between groups. Starvation/refeeding regime resulted in higher slaughter yield, but no overall effect was seen on hepatosomatic index, water content, water holding capacity (WHC), muscle pH, hardness or flesh colour compared with control groups. Continuous light increased gutted weight and slaughter yield, lowered WHC and depressed maturation compared with fish under natural light regime. Increased growth rate resulted in softer fillets and lower muscle pH.     

Large-scale deployment of a rice 6 K SNP array for genetics and breeding applications

Background

Fixed arrays of single nucleotide polymorphism (SNP) markers have advantages over reduced representation sequencing in their ease of data analysis, consistently higher call rates, and rapid turnaround times. A 6 K SNP array represents a cost-benefit “sweet spot” for routine genetics and breeding applications in rice. Selection of informative SNPs across species and subpopulations during chip design is essential to obtain useful polymorphism rates for target germplasm groups. This paper summarizes results from large-scale deployment of an Illumina 6 K SNP array for rice.

Results

Design of the Illumina Infinium 6 K SNP chip for rice, referred to as the Cornell_6K_Array_Infinium_Rice (C6AIR), includes 4429 SNPs from re-sequencing data and 1571 SNP markers from previous BeadXpress 384-SNP sets, selected based on polymorphism rate and allele frequency within and between target germplasm groups. Of the 6000 attempted bead types, 5274 passed Illumina’s production quality control. The C6AIR was widely deployed at the International Rice Research Institute (IRRI) for genetic diversity analysis, QTL mapping, and tracking introgressions and was intensively used at Cornell University for QTL analysis and developing libraries of interspecific chromosome segment substitution lines (CSSLs) between O. sativa and diverse accessions of O. rufipogon or O. meridionalis. Collectively, the array was used to genotype over 40,000 rice samples. A set of 4606 SNP markers was used to provide high quality data for O. sativa germplasm, while a slightly expanded set of 4940 SNPs was used for O. sativa X O. rufipogon populations. Biparental polymorphism rates were generally between 1900 and 2500 well-distributed SNP markers for indica x japonica or interspecific populations and between 1300 and 1500 markers for crosses within indica, while polymorphism rates were lower for pairwise crosses within U.S. tropical japonica germplasm. Recently, a second-generation array containing ~7000 SNP markers, referred to as the C7AIR, was designed by removing poor-performing SNPs from the C6AIR and adding markers selected to increase the utility of the array for elite tropical japonica material.

Conclusions

The C6AIR has been successfully used to generate rapid and high-quality genotype data for diverse genetics and breeding applications in rice, and provides the basis for an optimized design in the C7AIR.

     

High fluid shear strain causes injury in silver shark: Preliminary implications for Mekong hydropower turbine design

The Lower Mekong Basin is facing unprecedented threats to fish diversity from hydropower development. There is increasing pressure on developers and construction authorities to design solutions to improve fish survival through turbines, thus protecting the resources in regions being developed for hydropower. A hydraulic characteristic of hydropower turbines with known fisheries impacts is fluid shear stress. Elevated shear stress occurs where rapidly flowing water passes near spillways, screens and within turbine draft tubes. Shear stress can have adverse impacts on fish, but no work has assessed whether this holds true for Mekong River species. A flume was used to determine critical tolerances of silver shark, Balantiocheilos melanopterus (Bleeker), to shear stress rates at a high‐velocity jet which simulated a hydropower turbine. Fish were assessed for injury or mortality following exposure. Results were compared against a no‐shear control. Injury and mortality were greater at higher shear stress exposures. Injuries occurred at all shear exposure levels with mortality at shear levels higher than 600/s. This approach should help design future hydropower turbines if data on other species demonstrate similar results. If the likelihood of adverse impact is high, then shear stress will need to be considered in the design of future hydropower facilities.     

Predicting adoption of double cropping in paddy fields of northern Iran: a comparison of statistical methods

Factors affecting the adoption of double cropping were explored in rice farms of Fouman County of Guilan Province in northern Iran using artificial neural networks (ANNs), linear discriminant analysis (LDA), and logistic regression (LGR). Eleven factors (age, education, occupation, family size, type of farm ownership, distance to the agricultural service center, attending agricultural extension courses, use of financial resources and bank loans, number of domestic animals, area under cultivation, and social participation) were examined. An additional objective was to compare the ability of the three models in predicting the adoption of double cropping. ANNs showed an overall predictive power of 89.8%. LDA showed an overall predictive power of 83.2%, with seven of the eleven independent variables being effective on the adoption of double cropping. LGR indicated an overall predictive power of 87.6%, with eight of the eleven independent variables being effective on the adoption of double-rice cropping. ANNs showed higher power than LGR and LDA in predicting the adoption of double cropping. Based on all three methods used for analysis, the most important independent variables were social participation and area under cultivation (positive factors) as well as distance to the agricultural service center and family members (negative factors). Establishment of cooperatives or other kinds of farmers’ associations to foster social participation could motivate adoption of double cropping, particularly among small-scale farmers. To increase agricultural services, more local centers should be created in rural areas. The government should promote double cropping through effective incentives and technology transfer to small-scale farmers.     

Histological alterations in gills of shrimp Litopenaeus vannamei in low‐salinity waters under different stocking densities: Potential relationship with nitrogen compounds

Two experimental modules with different stocking densities (M1 = 70 and M2 = 120 shrimp /m²) were examined weekly over a culture cycle in tanks with low‐salinity water (1.9 g/L) and zero water exchange. Results showed survival rates of 87.7 and 11.9% in M1 and M2, respectively. Water temperature, pH, dissolved oxygen, electrical conductivity and chlorophyll a were not significantly (p > .05) different between modules. In contrast, the concentrations of nitrogen compounds were significantly (p < .05) different between modules, except nitrite‐N (M2 were 2.31 ± 1.38 mg/L N‐TAN, 0.18 ± 0.49 mg/L N‐NO₂^? and 6.83 ± 6.52 mg/L N‐NO₃^?; in M1: 0.97 ± 0.73 mg/L N‐TAN, 0.05 ± 0.21 mg/L N‐NO₂^? and 0.63 ± 0.70 mg/L N‐NO₃^?). When waters of both modules reached higher levels of ammonia and nitrite, histological alterations were observed in gills. The histological alterations index (HAI) was higher in M2 (5‐112) than in M1 (2‐22).     

Simultaneous selection for seed and forage production in cocksfoot (Dactylis glomerata): application of drought tolerance and susceptibility indices

An experiment was conducted to estimate drought tolerance of some cocksfoot genotypes based on seed and forage yield and related indices (including tolerance index, mean productivity, geometric mean productivity, reduction percentage index, stress tolerance index and stress susceptibility index) and to identify relationships between measured traits. Twenty‐five genotypes were evaluated in the field under control and drought‐stress environments over 2 years. The results revealed a high variation for seed yield and forage yield and the measured indices under both moisture conditions. No correlation was observed between seed yield and forage yield under the control treatment, but this correlation was positively significant under the water‐stress treatment. Drought‐tolerant and susceptible genotypes were identified based on seed and forage yield performance. Genotypes 2, 4 and 7 had high seed yield, while genotypes 7 and 10 had high forage yield under both stressed and non‐stressed conditions and were identified as the most tolerant genotypes in each category. The results also revealed that genotypes 1, 2, 4, 6, 7, 8 and 24 had relatively high seed and forage yield in both control and drought‐stressed conditions. These genotypes can be used for further studies to improve both seed and forage yields concurrently.